Simon Twigger @ MCW

bioinformatics and related stuff

Archives for the ‘Uncategorized’ Category

Updated RGD Dashboard Widget

By Simon • Oct 21st, 2009 • Category: Uncategorized

I’ve updated the RGD dashboard widget for the Mac. Nothing very significant has changed other than it now runs the most recent search tools on RGD rather than the older ones. I’m updating the download on the Apple site so it should be accessible from there too.

addthis_url = ‘http%3A%2F%2Ftwigger.hmgc.mcw.edu%2Findex.php%2F2009%2F10%2F21%2Fupdated-rgd-dashboard-widget%2F’;
[...]



Bioinformatics Links from Physiological Genomics course

By Simon • Jan 31st, 2008 • Category: Uncategorized

In the PG bioinformatics course we’ve been using Google Notebook to keep track of the sites we visit and what they offer. This is a link to the public version of this notebook. We will keep adding to this as we go so hopefully it will improve over time!
http://www.google.com/notebook/public/01303047768937417389/BDQdRSwoQ-rOwxfwi
Simon.

Powered by ScribeFire.

addthis_url [...]



Rollyo

By Simon • Oct 14th, 2006 • Category: Uncategorized

I came across Rollyo (http://rollyo.com/index.html) today while idly browsing through the web (Via Joyent.com, yet another online information management/collaboration system, Im still going to use Basecamp). Its a way to ‘roll your own’ search engine, including the sites you know and trust, rather than having to wade through everything in the known googleverse. Could be [...]



ID Mapping interface at UniProt

By Simon • Aug 7th, 2006 • Category: Uncategorized

Came across this ID mapping tool at Uniprot today. Looks like a potentially handy thing for the ever-present problem of mapping from one ID space to another. Seems very sequence oriented and doesnt have RGD IDs as one of the identifier types that it works with…
http://www.pir.uniprot.org/search/idmapping.shtml

addthis_url = ‘http%3A%2F%2Ftwigger.hmgc.mcw.edu%2Findex.php%2F2006%2F08%2F07%2Fid-mapping-interface-at-uniprot%2F’;
addthis_title [...]



O’Reilly Radar

By Simon • Jul 12th, 2006 • Category: Uncategorized

Came across an interesting blog from O’Reilly today:
http://radar.oreilly.com/
Lots of posts on upcoming technology from the computer-savvy folks at OReilly.

addthis_url = ‘http%3A%2F%2Ftwigger.hmgc.mcw.edu%2Findex.php%2F2006%2F07%2F12%2Foreilly-radar%2F’;
addthis_title = ‘O%26%238217%3BReilly+Radar’;
addthis_pub = ’simont’;



Configuring New BioMart instance with Taverna

By Simon • Dec 1st, 2005 • Category: Uncategorized

I recently played around with installing BioMart with a view to loading our own data and using the Taverna workflow tool as a way of integrating this data with other web services. I’ve documented the procedures and steps I took in the hope that this might be of use to others.